The 12 Best Inventory Management Software for Shopify in 2025

Discover the top picks for the best inventory management software for Shopify designed to optimize your online shop.

Written by
Oskar Mortensen
Calendar Icon - Dark X Webflow Template
November 27, 2024

Efficient inventory management is crucial for the success of any e-commerce business. For Shopify merchants, choosing the right inventory management system can streamline operations, reduce costs, and enhance customer satisfaction.

This article explores the 12 best inventory management systems that integrate seamlessly with Shopify, highlighting their key features, pricing, and suitability for different types of businesses.

Why Inventory Management Software Are Important for Shopify Merchants

As your operations expand, the native Shopify inventory features may become limiting. This is where inventory management systems (IMS) provide significant value, offering advanced functionalities to streamline your processes.

Integrating an IMS with Shopify can significantly enhance your store's performance:

  • Prevent Stockouts and Overselling: Real-time inventory updates across all sales channels keep you in control.
  • Optimize Stock Levels: Demand forecasting helps maintain the ideal inventory balance.
  • Streamline Order Fulfillment: Automated order processing and shipping integrations ensure efficient fulfillment.
  • Enhance Reporting and Analytics: Access detailed insights into sales trends, inventory turnover, and profitability.
  • Improve Customer Satisfaction: Faster order processing and accurate stock information lead to better customer experiences.

Top 12 Inventory Management Software for Shopify

These inventory management systems are the top ones you should consider when looking in 2025:

1. TradeGecko (QuickBooks Commerce)

TradeGecko, rebranded as QuickBooks Commerce, is a comprehensive inventory and order management system designed for small to medium-sized businesses. It integrates seamlessly with Shopify, providing real-time inventory updates and centralized order management.

Key Features:

  • Multi-Channel Inventory Management: Syncs inventory across Shopify and other sales channels like Amazon and eBay.
  • Order Management: Centralizes orders from all channels for efficient processing.
  • B2B E-commerce Platform: Offers a private wholesale portal for B2B customers.
  • Accounting Integration: Integrates with QuickBooks Online for streamlined financial management.
  • Reporting and Analytics: Provides insights into sales performance and inventory health.

Pricing:

Plans start at $39 per month for the Founder plan, supporting one user and 50 sales orders per month. Higher-tier plans offer increased order limits and additional features.

Ideal For: Small to medium-sized Shopify merchants seeking integrated inventory and accounting solutions.

2. Zoho Inventory

Zoho Inventory is a cloud-based inventory management software that helps businesses manage orders and inventory across multiple channels, including Shopify.

Key Features:

  • Multi-Channel Selling: Integrates with Shopify, Amazon, eBay, and Etsy.
  • Order Management: Streamlines order processing from creation to fulfillment.
  • Stock Management: Real-time tracking with batch and serial number tracking.
  • Shipping Integrations: Connects with major carriers for rate comparisons and tracking.
  • Automation: Automates workflows like reordering and order updates.

Pricing:

Plans start at $59 per month for the Standard plan, supporting 1,500 orders and two warehouses. A free plan is available with limited capabilities.

Ideal For: Shopify merchants looking for an affordable and user-friendly inventory management solution.

3. Cin7

Cin7 is a robust inventory management system that connects products, sales channels, stock locations, orders, and workflows, integrating seamlessly with Shopify. Check out other Cin7 alternatives here.

Key Features:

  • Omnichannel Management: Manages inventory across retail, wholesale, and e-commerce channels.
  • Extensive Integrations: Connects with over 550 integrations, including marketplaces and 3PL providers.
  • Automation: Automates order routing, stock transfers, and replenishment.
  • Warehouse Management: Advanced features including barcode scanning and batch tracking.
  • Built-in POS: Provides a point-of-sale system for in-store sales.

Pricing:

Plans start at $299 per month, including one user and two integrations. Customized plans are available.

Ideal For: Medium to large Shopify businesses needing advanced inventory management with extensive integrations.

4. Extensiv

Extensiv Order Manager is an all-in-one operations platform that unifies inventory, order management, and analytics for high-volume e-commerce businesses on Shopify.

Key Features:

  • Inventory Synchronization: Real-time updates across all sales channels and warehouses.
  • Order Management: Centralizes order processing with automation rules.
  • Automation Tools: Automates tasks like order routing and fulfillment.
  • Advanced Analytics: Provides insights into profitability, sales trends, and product performance.
  • Integrations: Connects with marketplaces, shopping carts, and 3PL providers.

Pricing:

Custom pricing based on order volume and business needs. Contact Extensiv for a quote.

Ideal For: High-volume Shopify merchants requiring robust automation and advanced analytics.

5. DEAR Systems

DEAR Systems is a cloud-based inventory management solution offering features for inventory, manufacturing, purchasing, sales, and accounting.

Key Features:

  • Inventory Management: Real-time stock tracking with batch and serial number tracking.
  • Order Management: Streamlines sales and purchase order processing.
  • Manufacturing Module: Supports light manufacturing with bill of materials.
  • E-commerce Integrations: Integrates with Shopify and other platforms.
  • Accounting Integration: Syncs with Xero, QuickBooks Online, and MYOB.

Pricing:

Plans start at $325 per month for five users. A 14-day free trial is available.

Ideal For: Shopify businesses seeking comprehensive inventory and order management with manufacturing capabilities.

6. Veeqo

Veeqo is an inventory and order management platform designed for multichannel e-commerce retailers, integrating seamlessly with Shopify.

Key Features:

  • Inventory Synchronization: Keeps stock levels updated across all channels.
  • Order Management: Centralizes orders for efficient processing.
  • Shipping Integration: Connects with major carriers for label printing and tracking.
  • Reporting and Analytics: Offers insights into sales and inventory performance.
  • Barcode Scanner App: Facilitates stock counts and warehouse operations.

Pricing:

Plans start at $156 per month, billed annually. A 14-day free trial is available.

Ideal For: Shopify retailers selling across multiple channels needing integrated inventory and shipping management.

7. Unleashed

Unleashed provides real-time visibility and control over stock across multiple locations, integrating with Shopify for seamless operations.

Key Features:

  • Real-Time Inventory Control: Tracks stock levels and movements.
  • Multi-Warehouse Management: Manages inventory across various locations.
  • Integrations: Connects with Shopify, accounting software, and other platforms.
  • Reporting and Analytics: Detailed reports on inventory, sales, and margins.
  • Production Management: Supports assembly and disassembly processes.

Pricing:

Plans start at $349 per month for the Medium plan. A 14-day free trial is available.

Ideal For: Shopify merchants needing advanced inventory control and production management.

8. Linnworks

Linnworks is a cloud-based inventory and warehouse management system designed to prevent stockouts and overselling, integrating seamlessly with Shopify.

Key Features:

  • Inventory Management: Real-time tracking with barcode scanning.
  • Warehouse Management: Optimizes operations with pick lists and quality control.
  • Multi-Channel Integration: Connects with Shopify and other marketplaces.
  • Order Management: Streamlines fulfillment processes.
  • Reporting Tools: Provides insights into inventory levels and warehouse performance.

Pricing:

Custom pricing based on users and modules. Contact Linnworks for a quote.

Ideal For: Shopify businesses with complex warehouse operations seeking optimization.

9. Ordoro

Ordoro is an all-in-one inventory management and shipping platform that integrates with Shopify.

Key Features:

  • Inventory Synchronization: Updates stock levels across all channels.
  • Shipping Management: Offers discounted rates and batch label printing.
  • Kitting and Bundling: Creates product bundles and kits.
  • Supplier Management: Supports dropshipping and purchase orders.
  • Analytics: Reports on sales, inventory turnover, and shipping costs.

Pricing:

Plans start at $59 per month for shipping features. The Pro plan with inventory management starts at $499 per month. A 15-day free trial is available.

Ideal For: Shopify merchants needing integrated inventory and shipping management.

10. Fishbowl Inventory

Fishbowl Inventory is a robust inventory management solution that integrates with Shopify and offers manufacturing and warehouse management features.

Key Features:

  • Inventory Tracking: Manages stock across multiple locations.
  • Manufacturing Support: Work orders and production stages.
  • Order Management: Streamlines sales and purchase orders.
  • Integration: Connects with Shopify, QuickBooks, and Amazon.
  • Barcode Scanning: Enhances accuracy in handling inventory.

Pricing:

One-time license purchase starting at $4,395. Annual maintenance fees apply.

Ideal For: Shopify businesses requiring advanced inventory and manufacturing capabilities.

11. Katana

Katana is a manufacturing ERP that offers inventory management specifically designed for manufacturers and makers selling on Shopify.

Key Features:

  • Real-Time Inventory Management: Tracks raw materials and finished goods.
  • Shop Floor Control: Manages production tasks and schedules.
  • Integration with Shopify: Syncs orders and inventory levels.
  • Bill of Materials (BOM): Manages recipes and production costs.
  • Visual Production Planning: Provides a clear overview of production processes.

Pricing:

Plans start at $129 per month for the Essential plan. A 14-day free trial is available.

Ideal For: Shopify merchants involved in manufacturing or assembly processes.

Comparison Table of Inventory Management Software for Shopify

Here are the best inventory management software for Shopify summedup in a table:

Tools For Small Businesses Table

Inventory System

Pricing

Key Features

Ideal For

TradeGecko (QuickBooks Commerce)

From $39/month

Multi-channel inventory, order management, accounting integration

SMBs needing integrated inventory and accounting

Zoho Inventory

From $59/month

Multi-channel selling, order and stock management, shipping integrations

SMBs seeking affordable, user-friendly inventory management

Cin7

From $299/month

Omnichannel management, extensive integrations, automation

Medium to large businesses needing advanced features

Extensiv

Custom pricing

Inventory synchronization, automation tools, advanced analytics

High-volume merchants requiring robust automation

DEAR Systems

From $325/month

Inventory and order management, manufacturing module

Businesses needing comprehensive management with manufacturing

Orderhive

From $95/month

Multi-channel integration, automation, shipping integrations

Merchants seeking cost-effective solutions with automation

Veeqo

From $156/month

Inventory synchronization, order management, shipping integration

Retailers selling across multiple channels

Unleashed

From $349/month

Real-time inventory control, multi-warehouse, production management

Merchants needing advanced inventory and production control

Linnworks

Custom pricing

Real-time inventory, warehouse management, multi-channel integration

Businesses with complex warehouse operations

Ordoro

From $59/month

Inventory synchronization, shipping management, supplier management

Merchants needing integrated inventory and shipping

Fishbowl Inventory

From $4,395 (one-time fee)

Inventory tracking, manufacturing support, accounting integration

Businesses requiring advanced inventory and manufacturing

Katana Manufacturing ERP

From $129/month

Real-time inventory, shop floor control, production planning

Manufacturers and makers on Shopify

Choosing the Right Inventory Management Software for Your Shopify Store

Selecting the best inventory management software for your Shopify store involves evaluating several key factors to ensure it aligns with your business needs. Here's a guide to help you make an informed decision:

  1. Business Size and Complexity: Consider the scale of your operations. Smaller businesses might benefit from user-friendly and affordable options like Zoho Inventory or Orderhive, while larger enterprises may require more robust solutions like Cin7 or DEAR Systems that offer extensive features and integrations.
  2. Sales Channels: If you sell across multiple platforms, ensure the software supports multi-channel integration. Most systems, such as Linnworks and Veeqo, offer seamless connectivity with various marketplaces and e-commerce platforms in addition to Shopify.
  3. Feature Requirements: Identify the specific features you need. For instance, if manufacturing support is crucial, DEAR Systems or Katana Manufacturing ERP might be suitable. For advanced analytics and automation, consider Extensiv.
  4. Scalability: Choose a system that can grow with your business. As your operations expand, you'll need software that can handle increased inventory, orders, and sales channels without compromising performance.
  5. Ease of Use: The software should be intuitive and easy to implement. This minimizes the learning curve and ensures your team can quickly adapt to the new system.
  6. Budget: Evaluate the pricing models and ensure they fit within your budget. Some systems offer custom pricing based on your specific needs, while others have tiered plans. Consider both upfront costs and long-term value.
  7. Customer Support: Reliable customer support is essential for addressing any issues that arise. Check the availability and quality of support offered by the provider, as this can vary based on the pricing plan.

Frequently Asked Questions

Here we have answered some of the most commonly asked questions about choosing an inventory management software for Shopify merchants:

Why do I need an inventory management system for Shopify?

An inventory management system enhances Shopify's native capabilities by providing advanced features like multi-channel synchronization, demand forecasting, warehouse management, and automation, leading to improved efficiency and customer satisfaction.

Can these systems integrate seamlessly with Shopify?

Yes, all the systems listed offer seamless integration with Shopify, allowing for real-time synchronization of inventory levels, orders, and product information.

How do I choose the right inventory management system for my business?

Consider factors like the size of your business, number of sales channels, complexity of operations, specific features needed (e.g., manufacturing support), scalability, ease of use, and budget.

Are these systems suitable for small businesses?

Yes, several options like Zoho Inventory, Orderhive, and TradeGecko offer affordable plans tailored for small to medium-sized businesses.

Do these systems support multi-channel selling?

Most of these systems support multi-channel selling, integrating with various marketplaces and e-commerce platforms in addition to Shopify.

Is customer support available for these inventory management systems?

Yes, most providers offer customer support through various channels like email, phone, and live chat. Support availability may vary based on the pricing plan.

Want to try the #1 AI Writer for SEO Copywriting?

Create anything from blog posts to product descriptions with 1-click AI drafts or our chat assistant. Powered by a next-gen SEO engine that ensures your content actually ranks. Try it now with a free trial→

The 12 Best Inventory Management Software for Shopify in 2025

This is an article written by:

Oskar is highly driven and dedicated to his editorial SEO role. With a passion for AI and SEO, he excels in creating and optimizing content for top rankings, ensuring content excellence at SEO.AI.